Popular Design for Gene Expression - Metagenomics (NGS)

Popular Design for Gene Expression - Metagenomics (NGS) – Biomarker

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Popular Design for Gene Expression - Metagenomics (NGS) – Biomarker Detail:

Transcipt identification

Raw data processing

Metagenome assembly

Metagenome component analysis

PCA

Function annotation

Alpha diversity analysis -Gene level

Beta diversity on functional genes

PCoA

Non-redundant gene set

NMDS

UPGMA

Anosim

permanova

RDA/CCA

Intergroup differential analysis

Alpha diversity analysis -Species level:

Random forest

Lefse

Beta diversity analysis on species

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