Newly Arrival Chip Sequencing - NGS-WGS (Illumina/BGI)

Newly Arrival Chip Sequencing - NGS-WGS (Illumina/BGI) – Biomarker

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Newly Arrival Chip Sequencing - NGS-WGS (Illumina/BGI) – Biomarker Detail:

Bioinformatics

Raw data quality control

Alignment with reference genome

SNP identification

SNP annotation

SNP calling among samples

Small InDel identification

Small Indels between sample

SV calling

Small InDel annotation

CNV calling

Distribution of variations on genome

Circos map

Function annotation on variations (NR,SwissProt,GO,KEGG,COG,KOG,Pfam）

PCR primer design

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