Imephu yobushushu
Ifayile yedatha yeMatrix isetyenziselwa umzobo wemephu yobushushu, enokuthi ihluze, iqhele kwaye idibanise idatha yematriki.Isetyenziswa kakhulu kuhlalutyo lweqela lomgangatho wokuchazwa kofuzo phakathi kweesampulu ezahlukeneyo.
Gene Annotation
Inkcazo yomsebenzi we-Gene yenziwa ngokulandelelana kwemephu kwifayile ye-FASTA ngokuchasene nedatha eyahlukeneyo.
Gene Annotation
Isixhobo sokuKhangela esisisiseko soLungelelwaniso lweNdawo
CDS_UTR_Prediction
Esi sixhobo senzelwe ukuqikelela imimandla yekhowudi (CDS) kunye nemimandla engakhowudiyo (UTR) ngokulandelelana okubhaliweyo okunikiweyo okusekelwe kuqhushumbo ngokuchasene nesiseko sedatha yeprotheyini eyaziwayo kunye noqikelelo lweORF.
Iploti yaseManhattan
Isakhiwo seManhattan senza umboniso wedatha kunye nenani elikhulu lamanqaku edatha.Isetyenziswa ngokuqhelekileyo kwizifundo ze-genome-wide association (GWAS).
Iisekethe
I-CIRCOS diagram yenza unikezelo oluthe ngqo lwe-SNP, i-InDeL, i-SV, i-CNV yosasazo kwi-genome.
GO_Ukutyebisa
I-TopGO sisixhobo esenzelwe ukutyebisa okusebenzayo.Iphakheji ye-TopGO-Bioconductor iquka uhlalutyo oluhlukeneyo lokubonisa, uhlalutyo lokutyebisa lwe-GO kunye nokubonwa kweziphumo.Izakuvelisa ifolda enemveliso enegama elithi "Graph", equlathe iziphumo ze topGO_BP, topGO_CC kunye ne topGO_MF.
WGCNA
I-WGCNA yindlela esetyenziswa ngokubanzi yokumbiwa kwedatha ekufumaneni iimodyuli zejene zokubonisa ngokubambisana.Iyasebenza kwiinkcukacha ezahlukeneyo zokuchaza kuquka idatha ye-microarray kunye nedatha yokubonakalisa ufuzo olusuka kulandelelwano lwesizukulwana esilandelayo.
InterProScan
Uhlalutyo lweprotheyini ye-InterPro kunye nokuhlelwa
GO_KEGG_Ukutyebisa
Esi sixhobo siyilo lokuvelisa i-GO etyebisa i-histogram, i-histogram yokuphucula i-KEGG kunye ne-KEGG yokutyebisa indlela esekelwe kwiseti yemfuza enikeziweyo kunye nochazo oluhambelanayo.