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I-PacBio-Ubude obugcweleyo be-Transcriptome (Ayiyo-Reference)
I-Amplicon (16S / 18S / ITS) iqonga liphuhliswa kunye neminyaka yamava kuhlalutyo lweprojekthi ye-microbial diversity, equlethe uhlalutyo olusisiseko olusemgangathweni kunye nohlalutyo lomntu: uhlalutyo olusisiseko lubandakanya umxholo wohlalutyo oluqhelekileyo lophando lwe-microbial lwangoku, umxholo wokuhlalutya ucebile kwaye ubanzi, kunye neziphumo zohlalutyo zinikezelwe ngohlobo lweengxelo zeprojekthi;Umxholo wohlalutyo lobuqu uhlukile.Iisampulu zinokukhethwa kwaye iiparamitha zinokumiselwa ngokuguquguqukayo ngokwengxelo yohlalutyo olusisiseko kunye nenjongo yophando, ukufezekisa iimfuno zomntu.Inkqubo yokusebenza yeWindows, ilula kwaye iyakhawuleza.
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I-PacBio-Ubude obugcweleyo be-Transcriptome (Ayiyo-Reference)
Ukuthatha i-Pacific Biosciences (i-PacBio) ye-Isoform yokulandelelanisa idatha njengegalelo, le App iyakwazi ukuchonga ulandelelwano olupheleleyo lwe-transcript (ngaphandle kwendibano).Ngokwenza imephu yolandelelwano lobude obupheleleyo ngokuchasene ne-genome yereferensi, imibhalo ebhaliweyo inokuphuculwa ngejene eyaziwayo, imibhalo ebhaliweyo, imimandla yekhowudi, njl.njl. Kule meko, ukuchongwa okuchaneke ngakumbi kwezakhiwo ze-mRNA, njengokunye ukudityaniswa, njl njl, kunokufezekiswa.Uhlalutyo oludibeneyo kunye nedatha ye-NGS yolandelelwano lwe-transcriptome yenza inkcazo ebanzi ngakumbi kunye nobungakanani obuchanekileyo ekubonakalisweni kwinqanaba le-transcript, elizuza kakhulu kwintetho ephantsi yolwahlulo kunye nohlalutyo olusebenzayo.
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Iikhithi zezixhobo
I-BMKCloud yiqonga elikhokelayo le-bioinformatic elibonelela ngesisombululo esisodwa kwiinkqubo ze-genomic, ezithenjwa ngokubanzi ngabaphandi kwiindawo ezahlukeneyo ezibandakanya ezonyango, ezolimo, ezendalo, njl. , izixhobo zekhompyutha, isiseko sedatha yoluntu, izifundo ze-intanethi ze-bioinformatic, njl. njl. I-BMKCloud inezixhobo ezahlukeneyo ze-bioinformatic ezisetyenziswa rhoqo ezibandakanya i-gene annotation, izixhobo ze-evolutionary genetic, i-ncRNA, ulawulo lomgangatho wedatha, ukudibanisa, ukulungelelaniswa, ukutsalwa kwedatha, ukuguqulwa kwedatha, izibalo, umvelisi wamanani, ulandelelwano. uhlalutyo, njl.
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iRNA encinci
Ii-RNA ezincinci luhlobo lwe-RNA emfutshane engeyiyo ikhowudi kunye nobude obuphakathi kwe-18-30 nt, kuquka i-miRNA, i-siRNA kunye ne-piRNA.Ezi RNA zincinci ziye zaxelwa kakhulu ukuba zibandakanyeka kwiinkqubo ezahlukeneyo zebhayoloji ezifana nokuthotywa kwe-mRNA, inhibition yokuguqulela, ukubunjwa kwe-heterochromatin, njl njl. Uhlalutyo lokulandelelana kwe-SmallRNA lusetyenziswe ngokubanzi kwizifundo zokuphuhliswa kwezilwanyana / izityalo, izifo, intsholongwane, njl njl. iqonga lokuhlalutya ulandelelwano lubandakanya uhlalutyo olusemgangathweni kunye nokumbiwa kwedatha ephezulu.Kwisiseko sedatha ye-RNA-seq, uhlalutyo olusemgangathweni lunokufikelela ukuchongwa kwe-miRNA kunye noqikelelo, i-miRNA ekujoliswe kuyo kuqikelelo lwemfuza, inkcazo kunye nohlalutyo lwentetho.Uhlalutyo oluphezulu luvumela ukukhangela kunye nokutsalwa kwe-miRNA ngokwezifiso, ukuveliswa komzobo weVenn, i-miRNA kunye nolwakhiwo lwenethiwekhi yemfuza ekujoliswe kuyo.
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I-NGS-WGS (Illumina/BGI)
I-NGS-WGS liqonga lokuhlalutya lokulandelelana kwakhona kwe-genome, eliphuhliswe kwisiseko samava atyebileyo kwi-Biomarker Technologies.Eli qonga lisebenziseka lula livumela ukungeniswa ngokukhawuleza kokuhamba komsebenzi wokuhlalutya okuhlanganisiweyo ngokubeka nje iparameter esisiseko, ehambelana nedatha yolandelelwano yeDNA eyenziwe kwiqonga le-Illumina kunye neqonga lokulandelelana kweBGI.Eli qonga libekwe kwiseva ephezulu yokusebenza kwekhompyuter, exhobisa uhlalutyo lwedatha olusebenzayo ngexesha elincinci kakhulu.Ukumbiwa kwedatha yobuqu kufumaneka kwisiseko sohlalutyo olusemgangathweni, kubandakanywa umbuzo oguquliweyo we-gene, uyilo lwe-PCR primer, njl.
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mRNA(Reference)
I-Transcriptome likhonkco phakathi kolwazi lwemfuzo ye-genomic kunye neproteome yomsebenzi webhayoloji.Ummiselo wenqanaba lokukhutshelwa ngowona ubalulekileyo kwaye yeyona ndlela yolawulo efundwa ngokubanzi yezinto eziphilayo.Ukulandelelana kwe-Transcriptome kunokulandelelanisa i-transcriptome nakweliphi na ixesha okanye phantsi kwayo nayiphi na imeko, kunye nesisombululo esichanekileyo kwi-nucleotide enye. isampula yemibhalo ebhaliweyo ethile.
Okwangoku, itekhnoloji yokulandelelanisa i-transcriptome isetyenziswe ngokubanzi kwi-agronomy, iyeza kunye nezinye iindawo zophando, kubandakanywa ukulawulwa kokuphuhliswa kwezilwanyana kunye nezityalo, ukulungelelaniswa kwendalo, ukusebenzisana kwe-immune, i-gene localization, iintlobo ze-genetic evolution kunye ne-tumor kunye nokufumanisa isifo sofuzo.
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IMetagenomics (NGS)
Eli qonga lokuhlalutya lenzelwe ukudubula kwedatha ye-metagenomic kwisiseko seminyaka yamava.Iquka ukuhamba komsebenzi okudityanisiweyo okuqulethe uhlalutyo oluhlukeneyo lwe-metagenomics efunekayo ngokuqhelekileyo kubandakanywa ukucutshungulwa kwedatha, izifundo zenqanaba leentlobo, izifundo ze-gene function-level studies, i-metagenome binning, njl. Ukongeza, izixhobo zokumbiwa kwedatha ezilungelelanisiweyo ziyafumaneka ekuhlalutyweni okusemgangathweni komsebenzi, kubandakanywa nofuzo kunye nombuzo weentlobo. , ukusetwa kwepharamitha, ukuvelisa umfanekiso owenziwe ngumntu, njl.
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LncRNA
Ii-RNA ezinde ezingezizo iikhowudi (lncRNA) luhlobo lwemibhalo enobude obude kune-200 nt, engakwaziyo ukufaka iiprotheyini zekhowudi.Ubungqina obuninzi bucebisa ukuba uninzi lwe-lncRNAs kusenokwenzeka ukuba zisebenze.Itekhnoloji yolandelelwano oluphezulu kunye nezixhobo zokuhlalutya i-bioinformatic zisixhobisa ukuba siveze ulandelelwano lwe-lncRNA kunye nokubeka ulwazi ngokufanelekileyo kwaye sikhokelele ekufumaneni ii-lncRNAs ezinemisebenzi ebalulekileyo yokulawula.I-BMKCloud inebhongo ngokubonelela abathengi bethu ngeqonga lokuhlalutya lolandelelwano lwe-lncRNA ukuphumeza uhlalutyo olukhawulezayo, oluthembekileyo noluguquguqukayo lwe-lncRNA.
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I-GWAS
I-Genome-wide association study (GWAS) ijolise ekuchongeni ukuhlukahluka kofuzo (i-genotype) ehambelana neempawu ezithile (phenotype).Izifundo ze-GWA ziphanda iimpawu zofuzo ezinqamlezileyo zegenome yenani elikhulu labantu kwaye ziqikelela unxulumano lwe-genotype-phenotype ngohlalutyo lwamanani kumgangatho wabemi.Ulandelelwano lwe-henome yonke lunakho ukufumana zonke iintlobo ezahlukeneyo zemfuzo.Ukudibanisa kunye nedatha ye-phenotypic, i-GWAS inokucutshungulwa ukuchonga i-phenotype ehambelana ne-SNPs, ii-QTL kunye neegenes zabaviwa, ezixhasa kakhulu izilwanyana zanamhlanje / ukuzala kwezityalo.I-SLAF sisicwangciso esenziwe lula sokulandelelana kwe-genome, efumanisa iimpawu ezisasazwe ngokubanzi ze-genome, i-SNP.Ezi SNP, njengabamakishi be-molecular genetic, banokuqhutyelwa izifundo zombutho kunye neempawu ezijoliswe kuzo.Sisicwangciso esingabizi kakhulu ekuchongeni iimpawu ezintsonkothileyo ezinxulumene nokwahluka kofuzo.
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I-Nanopore Ubude obupheleleyo be-transcriptomics
Ii-isoforms ezintsonkothileyo neziguquguqukayo kwizinto eziphilayo ziindlela ezibalulekileyo zofuzo zokulawula ukubonakaliswa kofuzo kunye neyantlukwano yeprotheyini.Ukuchongwa ngokuchanekileyo kwezakhiwo ze-transcript sisiseko sophononongo olunzulu lweendlela zokulawula i-gene expression.Iqonga lolandelelwano lweNanopore lizise ngempumelelo isifundo se-transcriptomic kumgangatho we-isoform.Eli qonga lokuhlalutya lenzelwe ukuhlalutya idatha ye-RNA-Seq eveliswe kwiqonga leNanopore kwisiseko se-genome yereferensi, efezekisa uhlalutyo olunobulunga kunye nobungakanani kwinqanaba le-gene kunye nenqanaba lokubhaliweyo.
