BMKCloud Log in
条形banner-03

News

T2T GENOME ASSEMBLY, GAP YEMAHARA GENOME

1stMaviri Mupunga Genomes1

Musoro: Gungano uye Kusimbiswa kweMaviri Asina Gap-asina Reference Genomes yeXian/indica Rice Inozivisa Manzwisisiro muPlant Centromere Architecture.

Doi:https://doi.org/10.1101/2020.12.24.424073

Yakatumirwa Nguva: Ndira 01, 2021.

Institute: Huazhong Agricultural University, China

Zvishandiso

O. sativa xian/indicamupunga mhando 'Zhenshan 97 (ZS97)' uye 'Minghui 63 (MH63)

Sequencing strategy

NGS inoverenga + HiFi inoverenga + CLR inoverenga + BioNano + Hi-C

Data:

ZS97: 8.34 Gb (~23x) HiFi inoverenga + 48.39 Gb (~131x ) CLR inoverenga + 25 Gb(~69x) NGS + 2 BioNano Irys masero

MH63: 37.88 Gb (~103x) HiFi inoverenga + 48.97 Gb (~132x) CLR inoverenga + 28 Gb(~76x) NGS + 2 BioNano Irys masero

Mufananidzo-1

Mufananidzo 1 Maviri-asina gap genomes emupunga (MH63 uye ZS97)

2ndBanana Genome2

Musoro: Telomere-to-telomere gapless chromosome yebhanana inoshandisa nanopore sequencing

Doi:https://doi.org/10.1101/2021.04.16.440017

Yakatumirwa Nguva: Kubvumbi 17, 2021.

Institute: Université Paris-Saclay, France

Zvishandiso

Kaviri haploidMusa acuminatasppmalaccensis(DH-Pahang)

Sequencing strategy uye data:

HiSeq2500 PE250 modhi + MinION/ PromethION (93Gb, ~200X )+ Mepu yeOptical (DLE-1+BspQ1)

Tafura 1 Kuenzanisa kweMusa acuminata (DH-Pahang) genome magungano

Tafura1-Kuenzanisa-kwe-GRCh38-uye-T2T-CHM13-vanhu-genome-assemblies
Mufananidzo-Musa-genomes-architecture-comparison

Mufananidzo 2 Musa genomes architecture kuenzanisa

3rdPhaeodactylum tricornutum genome3

Title: Telomere-to-telomere genome assembly yeP
haeodactylum tricornutum

Doi:https://doi.org/10.1101/2021.05.04.442596

Yakatumirwa Nguva: Chivabvu 04, 2021

Sangano: Western University, Canada

Zvishandiso

Phaeodactylum tricornutum(Culture Collection of Algae and Protozoa CCAP 1055/1)

Sequencing strategy uye data:

1 Oxford Nanopore minion inoyerera sero + iyo 2 × 75 yakapetwa-yekupedzisira yepakati-kubuda NextSeq 550 kumhanya

Mufananidzo-Workflow-for-telomere-to-telomere-genome-assembly-1-1024x740

Mufananidzo 3 Kufambiswa kwebasa kwetelomere-to-telomere genome assembly

4thMunhu CHM13 genome4

Title: Kutevedzana kwakazara kwegenome remunhu

Doi:https://doi.org/10.1101/2021.05.26.445798

Yakatumirwa Nguva: Chivabvu 27, 2021

Institute: National Institutes of Health (NIH), USA

Zvishandiso: cell line CHM13

Sequencing strategy uye data:

30 × PacBio circular consensus sequencing (HiFi) , 120 × Oxford Nanopore ultra-long kuverenga sequencing , 100 × Illumina PCR-Yemahara sequencing (ILMN) , 70 × Illumina / Arima Genomics Hi-C (Hi-C), BioNano uye Strand-seq

Tafura 2 Kuenzaniswa kweGRCh38 uye T2T-CHM13 magungano evanhu genome

Tafura-Kuenzanisa-kwe-Musa-acuminata-DH-Pahang-genome-assemblies

Reference

1.Sergey Nurk et al.Kutevedzana kwakazara kwegenome yemunhu.bioRxiv 2021.05.26.445798;doi:https://doi.org/10.1101/2021.05.26.445798

2.Caroline Belser et al.Telomere-to-telomere gapless chromosomes yebhanana inoshandisa nanopore sequencing.bioRxiv 2021.04.16.440017;doi:https://doi.org/10.1101/2021.04.16.440017

3.Daniel J. Giguere et al.Telomere-to-telomere genome musangano wePhaeodactylum tricornutum.bioRxiv 2021.05.04.442596;doi:https://doi.org/10.1101/2021.05.04.442596

4.Jia-Ming Song et al.Gungano uye Kusimbiswa kweMaviri Asina Gap-asina Reference Genomes yeXian/indica Rice Inozivisa Manzwisisiro muPlant Centromere Architecture.bioRxiv 2020.12.24.424073;doi:https://doi.org/10.1101/2020.12.24.424073


Nguva yekutumira: Jan-06-2022

Tumira meseji yako kwatiri: