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Zogulitsa

Eukaryotic mRNA Sequencing-Illumina

Kutsatizana kwa mRNA kumathandizira kuti ma mRNA onse alembedwe kuchokera ku ma cell pamikhalidwe inayake.Ndi ukadaulo wamphamvu kwambiri wowulula mawonekedwe a jini, kapangidwe kake ndi mamolekyu azinthu zina zachilengedwe.Mpaka pano, kutsatizana kwa mRNA kwagwiritsidwa ntchito kwambiri pakufufuza kofunikira, zowunikira zamankhwala, chitukuko cha mankhwala, ndi zina zambiri.

Pulatifomu: Illumina NovaSeq Platform


Tsatanetsatane wa Utumiki

Bioinformatics

Zotsatira za Demo

Ubwino wake

● Odziwa Kwambiri: Zitsanzo zoposa 200,000 zasinthidwa mu BMK zomwe zikuphatikizapo mitundu yosiyanasiyana ya zitsanzo, kuphatikizapo chikhalidwe cha maselo, minofu, madzi a m'thupi, ndi zina zotero.

● Dongosolo lokhazikika loyang'anira khalidwe labwino: Malo oyendetsera khalidwe lapakati pamasitepe onse kuphatikizapo kukonzekera zitsanzo, kukonzekera laibulale, kutsatizana ndi bioinformatics akuyang'aniridwa mosamala kuti apereke zotsatira zapamwamba.

● Malo angapo osungira omwe alipo kuti afotokoze ntchito ndi maphunziro owonjezera kuti akwaniritse zolinga zosiyanasiyana za kafukufuku.

● Ntchito zogulitsa pambuyo pa malonda: Ntchito zogulitsa pambuyo pake ndizovomerezeka kwa miyezi 3 polojekiti ikamalizidwa, kuphatikizapo kutsata mapulojekiti, kuthetsa mavuto, zotsatira za Q & A, ndi zina zotero.

Zitsanzo Zofunika ndi Kutumiza

Library Njira yotsatirira Deta yovomerezeka Kuwongolera Kwabwino
Poly A yowonjezera Chithunzi cha PE150

6gb pa

Q30≥85%

Zitsanzo Zofunika:

Nucleotides:

Conc.(ng/μl)

Mtengo (μg)

Chiyero

Umphumphu

≥ 20

≥ 0.5

OD260/280=1.7-2.5

OD260/230=0.5-2.5

Zochepa kapena zopanda mapuloteni kapena DNA kuipitsidwa komwe kumawonetsedwa pa gel.

Kwa zomera: RIN≥6.5;

Kwa nyama: RIN≥7.0;

5.0≥28S/18S≥1.0;

kukwera kochepa kapena kopanda koyambira

Thupi: Kulemera (kuuma):≥1 g
*Pa minofu yaing'ono kuposa 5 mg, timalimbikitsa kutumiza zitsanzo za minofu yowuma (mu madzi a nayitrogeni).

Kuyimitsidwa kwa cell:Chiwerengero cha ma cell = 3 × 106-1 × 107
*Tikupangira kutumiza ma cell a frozen lysate.Ngati selolo likhala laling'ono kuposa 5 × 105.

Zitsanzo za magazi:Kuchuluka ≥1 ml

Microorganism:Kulemera ≥ 1 g

Kutumiza Kwachitsanzo Kovomerezeka

Chidebe: 2 ml centrifuge chubu (zojambula za malata ndizosavomerezeka)

Zitsanzo zolembera: Gulu+ lofanana mwachitsanzo A1, A2, A3;B1, B2, B3...

Kutumiza:

  1. Dry-ice: Zitsanzo ziyenera kupakidwa m'matumba ndikukwiriridwa mu ayezi wouma.
  2. RNAstable machubu: RNA zitsanzo akhoza zouma mu RNA kukhazikika chubu (mwachitsanzo RNAstable®) ndi kutumizidwa mu firiji.

Kuyenda kwa Ntchito Yantchito

Chitsanzo cha QC

Kuyesera kupanga

kutumiza chitsanzo

Kupereka zitsanzo

Kuyesera koyendetsa ndege

Kusintha kwa RNA

Kukonzekera kwa Library

Kumanga laibulale

Kutsata

Kutsata

Kusanthula deta

Kusanthula deta

Pambuyo pogulitsa Services

Pambuyo pogulitsa ntchito


  • Zam'mbuyo:
  • Ena:

  • Bioinformatics

    wps_doc_10

    Eukaryotic mRNA sequencing kusanthula kayendedwe ka ntchito

    Bioinformatics

    ØKuwongolera khalidwe la data yaiwisi

    ØReference genome alignment

    ØKusanthula kapangidwe ka zilembo

    ØKuchulukitsa kwa mawu

    ØKusanthula kwamawu osiyanasiyana

    ØTanthauzo la ntchito ndi kuwonjezera

    1.mRNA Data Saturation curve

    3(1)

    2.Differential expression analysis-Volcano plot

    4(1)

    3.Ndemanga za KEGG pa DEGs

    5(1)

    4.GO classification pa DEGs

    6(1)

    pezani mtengo

    Lembani uthenga wanu apa ndikutumiza kwa ife

    Titumizireni uthenga wanu: