nsanja | Kukula kwa Library | Theoretical Data Yield (Per Cell) | Kulondola Pamodzi | Mapulogalamu |
Nanopore | 8Kb, 10kb, 20kb, Ultralong, cDNA-PCR | 70-90Gb / Cell | 85-92% | Kuitana kwa SV, De novo, Kutsatizana kwautali, Iso-Seq, ndemanga ya Gene, Kuzindikira kwa DNA methylation |
● Kupitilira zaka 5 papulatifomu yotsatizana ya PacBio yokhala ndi mapulojekiti masauzande ambiri otsekedwa okhala ndi mitundu yosiyanasiyana.
● BMKGENE ndi mnzawo wovomerezeka wa Oxford Nanopore, wokhala ndi ziphaso zapawiri za RNA/DNA.
● Pali mitundu yambiri ya sequencers yokhala ndi zida zonse ndi ndondomeko yokwanira yotsatizana.
● Malingana ndi nsanja ya Nanopore, kafukufuku woposa 10 wa zinyama ndi zomera za Denovo zasindikizidwa m'magazini otchuka padziko lonse lapansi.
Mtundu Wachitsanzo | Ndalama | Concentrtion(Qubit ®) | Voliyumu | Chiyero | Ena |
Genomic DNA | Zimatengera Zofunikira pa Data | ≥20ng/μl | ≥15μl | OD260/280=1.7-2.2; OD260/230≥1.5; Chotsani pachimake pa 260 nm, palibe kuipitsidwa | Kukhazikika kuyenera kuyezedwa ndi Qubit ndi Qubit/Nanopore ≤2 |
Mtengo wa RNA | ≥1.2μg | ≥100μg/μl | ≥15μl | OD260/280=1.7-2.5; OD260/230=0.5-2.5;palibe zoipitsidwa | Mtengo wa RIN ≥7.5 |
Kuwunika Kwamtundu wa Deta wa Zitsanzo za DNA
Table 1. Ziwerengero za deta yoyera.
BMKID | rawSeqNum | rawSumBase | cleanSeqNum | cleanSumBase | cleanN50Len | cleanN90Len | cleanMeanLen | cleanMaxLen | cleanMeanQual |
DNA_BMK01 | 1,218,239 | 26.37 | 1,121,736 | 25.90 | 28,014 | 15,764 | 23,090 | 143,181 | 9 |
Kuwunika kwa Ubwino wa Deta wa Zitsanzo za RNA
Table 1. Ziwerengero za deta yoyera.
Dzina lafayilo | ClientID | ReadNum | BaseNum | N50 | MeanLength | MaxLength | MeanQscore |
RNA_BMK001 | C2 | 8,947,708 | 4,047,230,083 | 398 | 452 | 129,227 | Q12 |
Chithunzi 1. Werengani kugawa kwautali
Chithunzi 2. Kugawa kwapamwamba kwa deta yoyera
Chithunzi 3. Kutalika ndi kugawa kwabwino kwa chiwerengero cha deta yoyera