● Ntau lub tswv yim sib txuas ua ke muaj rau cov hom phiaj tshawb fawb sib txawv
● Muaj kev paub dhau los hauv fungi genome los ua ke nrog ntau dua 10,000 pene-tiav genome assembled.
● Pab pawg kws tshaj lij tom qab muag kev pab txhawb nqa ua tiav cov kev tshawb fawb tshwj xeeb ntxiv.
Kev pabcuam | Sequence Strategy | Zoo guaranteed | Kwv yees lub sijhawm tig rov qab |
Fungal daim ntawv qhia zoo | Illumina 50X + Nanopore 100X | Contig N50≥2 Mb | 35 hnub ua haujlwm |
PacBio HiFi 30X | |||
Fungal pene-ua tiav daim ntawv qhia | Illumina 50X + Nanopore 100X (Pacbio HiFi 30X) + Hi-C 100X | Chromosome anchoring ratio> 90% | 45 hnub ua haujlwm |
● Raw cov ntaub ntawv zoo tswj
● Genome los ua ke
● Kev tshuaj ntsuam xyuas genome
● Gene muaj nuj nqi annotation
● Sib piv genomic tsom xam
RauDNA rho tawm:
Hom qauv | Tus nqi | Nco ntsoov | Purity |
DNA rho tawm | 1.2g 1 | 20 ng / μl | OD 260/280 = 1.6-2.5 |
Rau cov ntaub so ntswg:
Hom qauv | Pom zoo coj mus kuaj | Sample cia thiab xa khoom |
Unicellular fungus | Saib cov poov xab nyob rau hauv lub microscope thiab sau lawv nyob rau hauv lawv exponential theem Hloov cov kab lis kev cai (muaj kwv yees li 3-4.5e9 hlwb) rau hauv 1.5 lossis 2 ml eppendorf.(Ceev rau dej khov) Centrifuge lub raj rau 1 min ntawm 14000 g kom khaws cov kab mob thiab tshem tawm cov supernatant kom zoo Kaw lub raj thiab khov cov kab mob hauv cov kua nitrogen rau tsawg kawg 1-3 teev.Khaws lub raj rau hauv -80 ℃ fridge. | Kho cov qauv hauv cov kua nitrogen rau 3-4 teev thiab khaws cia hauv cov kua nitrogen los yog -80 degree mus rau lub sijhawm ntev.Qauv shipping nrog qhuav-dej khov yog yuav tsum tau. |
Macro fungus | Cov ntaub so ntswg nyob rau theem nquag loj hlob yog pom zoo. Yaug cov ntaub so ntswg nrog dej tsis muaj endotoxin, tom qab ntawd 70% ethonal. Txuag cov qauv hauv cov raj cryo. |
1.Circos daim duab ntawm fungal genomic Cheebtsam
2.Comparative genomics tsom xam: Phylogenetic tsob ntoo