● Muaj Kev Paub Txog: Ntau tshaj 200,000 tus qauv tau ua tiav hauv BMK uas suav nrog ntau hom qauv, suav nrog kab lis kev cai ntawm tes, cov ntaub so ntswg, kua dej hauv lub cev, thiab lwm yam thiab ntau dua 7,000 mRNA-Seq tej yaam num raug kaw npog ntau yam kev tshawb fawb.
● Kev tswj hwm nruj nruj: Cov ntsiab lus tseem ceeb ntawm kev tswj hwm zoo los ntawm txhua kauj ruam suav nrog kev npaj ua qauv, kev npaj tsev qiv ntawv, kev sib txuas lus thiab bioinformatics yog nyob rau hauv kev saib xyuas zoo kom xa cov txiaj ntsig zoo.
● Ntau cov ntaub ntawv muaj nyob rau kev ua haujlwm annotation thiab kev tshawb fawb ntxiv kom ua tiav ntau hom kev tshawb fawb.
● Cov kev pab cuam tom qab muag: Cov kev pab cuam tom qab muag siv tau rau 3 lub hlis tom qab ua tiav qhov project, suav nrog cov phiaj xwm rov qab, kev daws teeb meem, cov txiaj ntsig Q&A, thiab lwm yam.
Lub tsev qiv ntawv | Sequencing tswv yim | Cov ntaub ntawv pom zoo | Kev Tswj Xyuas Zoo |
Poly A enriched | Illumina PE 150 | 6gb ib | Q30≥85% |
Nucleotides:
Conc. (ng / μl) | Tus nqi (μg) | Purity | Kev ncaj ncees |
≥ 20 | ≥ 0.5 | OD 260/280 = 1.7-2.5 OD 260/230 = 0.5-2.5 Txwv tsis pub lossis tsis muaj protein ntau lossis DNA kis tau pom ntawm gel. | Rau cov nroj tsuag: RIN≥6.5; Rau tsiaj: RIN≥7.0; 5.0 ≥28S / 18S≥1.0; txwv los yog tsis muaj qhov nce siab |
Cov ntaub so ntswg: Nyhav (qhuav):≥1g
* Rau cov ntaub so ntswg me dua 5 mg, peb pom zoo kom xa flash khov (hauv kua nitrogen) cov ntaub so ntswg.
Cell ncua:Cell suav = 3 × 106- 1 × 107
* Peb pom zoo kom nkoj khov cell lysate.Yog hais tias lub xov tooj ntawm tes suav me dua 5 × 105.
Cov ntshav kuaj:Ntim ≥ 1 ml
Microorganism:Qhov hnyav ≥ 1 g
Ntim: 2 ml centrifuge tube (Tin foil tsis pom zoo)
Sample labeling: Pab pawg + replicate xws li A1, A2, A3;B1, B2, B3....
Kev xa khoom:
Bioinformatics
Eukaryotic mRNA sequencing tsom xam workflow
Bioinformatics
ØRaw cov ntaub ntawv zoo tswj
ØReference genome alignment
ØTranscript structure analysis
ØKev nthuav qhia kom muaj nuj nqis
ØDifferential expression analysis
ØFunction annotation thiab enrichment
1.mRNA Data Saturation nkhaus
2.Differential expression analysis-Volcano plot
3.KEGG annotation rau DEGs
4.GO kev faib tawm ntawm DEGs