Heatmap
Hoʻohana ʻia ka waihona ʻikepili matrix no ke kaha kiʻi ʻāina wela, hiki ke kānana, hoʻoponopono a me ka ʻikepili matrix cluster.Hoʻohana nui ʻia no ka nānā ʻana i ka puʻupuʻu o ka pae hōʻike gene ma waena o nā laʻana like ʻole.
Hōʻike Gene
Hana ʻia ka hōʻike hana Gene ma ka palapala ʻana i nā kaʻina ma ka faila FASTA e kūʻē i nā ʻikepili like ʻole.
Hōʻike Gene
Mea Paahana Huli Alignment Local
CDS_UTR_Prediction
Hoʻolālā ʻia kēia mea hana e wānana i nā ʻāpana coding (CDS) a me nā ʻāina non-coding (UTR) i nā kaʻina transcript i hāʻawi ʻia ma muli o ka pahū ʻana i ka ʻikepili protein ʻike ʻia a me ka wānana ORF.
ʻĀpana Manhattan
Hiki i ka ʻāpana Manhattan ke hōʻike i ka ʻikepili me ka nui o nā helu ʻikepili.Hoʻohana maʻamau ia i nā haʻawina hui genome-wide (GWAS).
Circos
Hiki i ke kiʻi CIRCOS ke hōʻike pololei i nā māhele SNP, InDeL, SV, CNV ma ka genome.
GO_Hoʻonui
ʻO TopGO kahi mea hana i hoʻolālā ʻia no ka hoʻonui ʻana i ka hana.ʻO ka pūʻolo TopGO-Bioconductor ka nānā ʻana i ka hōʻike ʻokoʻa, ka loiloi hoʻonui GO a me ka ʻike ʻana i nā hopena.E hoʻopuka ia i kahi waihona me ka hoʻopuka i kapa ʻia ʻo "Graph", aia nā hopena no topGO_BP, topGO_CC a me topGO_MF.
WGCNA
ʻO WGCNA kahi ʻano hana eli ʻikepili i hoʻohana nui ʻia no ka ʻike ʻana i nā modules co-expression module.Pili ia i ka ʻikepili hōʻike like ʻole me ka ʻikepili microarray a me ka ʻikepili hōʻike gene i hoʻokumu ʻia mai ke kaʻina o ka hanauna e hiki mai ana.
InterProScan
InterPro protein sequence analysis and classification
GO_KEGG_Hoʻonui
Hoʻolālā ʻia kēia mea hana e hana i ka histogram hoʻonui GO, histogram hoʻonui KEGG a me ke ala hoʻonui KEGG e pili ana i ka hoʻonohonoho gene i hāʻawi ʻia a me ka hōʻike pili.