Papahana | Nui o ka waihona | HuaʻIkeʻIke Manaʻo (Per Cell) | Hoʻokahi-kumu pololei | Nā noi |
Nanopore | 8Kb, 10kb, 20kb, Ultralong, cDNA-PCR | 70-90Gb/Celewele | 85-92% | Kāhea SV, De novo, Ke kaʻina holoʻokoʻa holoʻokoʻa, Iso-Seq, Hōʻike Gene, ʻike i ka methylation DNA |
● ʻOi aku ma mua o 5 mau makahiki o ka ʻike ma PacBio sequencing platform me nā tausani o nā papahana i pani ʻia me nā ʻano ʻano like ʻole.
● ʻO BMKGENE kekahi hoa pili o Oxford Nanopore, me ka palapala hōʻoia RNA/DNA papalua.
● Loaʻa nā hiʻohiʻona nui o nā sequencers me nā lako piha a me ka lawa o ka sequencing throughput.
● Ma muli o ka Nanopore platform, ʻoi aku ma mua o 10 mau noiʻi holoholona a me nā mea kanu Denovo i paʻi ʻia i loko o nā nūpepa kaulana honua.
ʻAno Laʻana | Ka nui | ʻO ka manaʻo (Qubit ®) | Volume | Maemae | ʻO nā mea ʻē aʻe |
DNA Genomic | E hilinaʻi i ka ʻikepili koi | ≥20ng/μl | ≥15μl | OD260/280=1.7-2.2; OD260/230≥1.5; Maʻemaʻe ka piko ma 260 nm, ʻaʻohe haumia | Pono e ana ʻia ka manaʻo e Qubit a me Qubit/Nanopore ≤ 2 |
Huina RNA | ≥1.2μg | ≥100μg/μl | ≥15μl | OD260/280=1.7-2.5; OD260/230=0.5-2.5; ʻaʻohe haumia | Waiwai RIN ≥7.5 |
ʻIke ʻIke maikaʻi o ka hōʻailona DNA
Papa 1. Heluhelu ma ka ikepili maemae.
BMKID | rawSeqNum | rawSumBase | cleanSeqNum | cleanSumBase | cleanN50Len | cleanN90Len | cleanMeanLen | cleanMaxLen | cleanMeanQual |
DNA_BMK01 | 1,218,239 | 26.37 | 1,121,736 | 25.90 | 28,014 | 15,764 | 23,090 | 143,181 | 9 |
ʻIke ʻIke ʻIke ʻIke o ka Laʻana RNA
Papa 1. Heluhelu ma ka ikepili maemae.
inoa faila | ClientID | Heluheluhelu | BaseNum | N50 | MeanLength | MaxLength | MeanQscore |
RNA_BMK001 | C2 | 8,947,708 | 4,047,230,083 | 398 | 452 | 129,227 | Q12 |
Kiʻi 1. Heluhelu i ka mahele lōʻihi
Kiʻi 2. Māhele helu maikaʻi o ka ʻikepili maʻemaʻe
Kiʻi 3. Ka lōʻihi a me ka puʻunaue helu maikaʻi o ka ʻikepili maʻemaʻe